Here is a project that I am now publishing through clickonce.

I just opened the project up in VS2005 and saw all of these warnings. Sheesh, here we go again...

(Note: I got an email from Patrick Darragh who is a Program Manager on the VB Team and has a lot to do with ClickOnce. Patrick tells me that "those warnings are controlled by the ‘Verify files uploaded to the server’ property on the Publish Options dialog off the Publish tab.  If you uncheck this property, the warning should go away.")